PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006417
Common NameLOC8274422, RCOM_1577370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 336aa    MW: 37729.9 Da    PI: 7.389
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006417genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-05175194120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++Cp C k+F+r  n++ H+
  30169.m006417 175 FSCPLCFKTFNRYNNMQMHM 194
                    89*****************9 PP

2zf-C2H214.69.4e-05259281123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F  + + ++H +++
  30169.m006417 259 FMCRKCGKAFAVRGDWRTHEKNC 281
                    89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-5175194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66175202IPR007087Zinc finger, C2H2
SMARTSM003550.61175197IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-6240279No hitNo description
Gene3DG3DSA:3.30.160.608.9E-6255279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549259279IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808259279IPR007087Zinc finger, C2H2
SMARTSM00355180285308IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MADPYSNYFN GWYNLKHLHH LSTASSASSS NPSLYSSYGC NLYSSGSIFN NTSSFAQYQS  60
SPPSPPVKEA LQLLSLSPTK HDHEKQQESS SNAMDLDMNK DDHDDDETVT VALHLGLPNP  120
SSVDLVSTLS SSTEISSDKE EVTVASGYQT TSSSLNKGQY WIPTPAQILI GPTQFSCPLC  180
FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP CYCCAPGCRN NIDHPRSKPL  240
KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK  300
DHIKSFGHGH AAYGIDSFEE EEEPASEIEQ DNESTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513471.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-142ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLB9RIA20.0B9RIA2_RICCO; TRANSPARENT TESTA 1 protein, putative
STRINGPOPTR_0003s20400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-126C2H2 family protein